This didn't seem to go through the first time, I will try again:

Heres how I would do it sudo perl -I /usr/local/koha/intranet/modules rebuildnonmarc.pl -c

Thanks! I tried it though and it wouldn't work :( So I added the use lib stuff to the scripts and saved them as new files just in case. Then I ran the new file and it worked! Only, sort of. The script ran, but nothing showed up in the opac or "items not issued report" so I took a closer look at the mysql database.. The new records have been loaded into the biblio table and the biblioitems table, but not the items table. ?? Has this happened to anyone else before? -Heidi